Plant MITE

SE3020370

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_507
Malus domestica
SE3020370
Mutator
MadM4
MDC006653.445:3519-3693
TTTATTTAT
GGGTAATGCTGGGGAGACTAAATTTGTAGACAAAATTTTGGAAACTAAAGGACATGGAAGTTGATGATTGGT

Secondary structure and sequence

TSD TIR

5'

3'

TTTATTTAT        C         T            A    TT  -GAA     ------A       GAA       -ATT   TT
         GGGTAATG TGGGGAGAC AAATTTGTAGAC AAAT  TG    ACTAA       GGACATG   GTTGATG    GGT  
         |||||||| ||||||||| |||||||||||| ||||  ||    |||||       |||||||   |||||||    |||  A
         CCCATTAC ATCCCTCTG TTTAAATATTTG TTTA  AC    TGGTT       CTTGTGC   TAATTGC    TCA  
TATTTATTT        C         T            A    CT  ACAG     ATACTTA       AAA       GAAT   TT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020370

TTTATTTATGGGTAATGCTGGGGAGACTAAATTTGTAGACAAAATTTTGGAAACTAAAGGACATGGAAGTTGATGATTGGTTTATTACTTAAGCGTTAATAAACGTGTTCATTCATATTGGTGACACATCATTTAGTTTATAAATTTTGTCTCCCTACCATTACCCTTTATTTAT

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