SE3020371

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_508
  • Malus domestica
  • SE3020371
  • Mutator
  • MadM78
  • MDC019578.109:18753-18969
  • CTCAATGTA
  • CAATGTAGGAAGAGGATCCTCTCCTGAGCTRAGGATGGGGATCCTCCTGACCACGAAATCTGGGCCGTTCAAATTTAATCCAAC

Secondary structure and sequence

TSD    TIR
5'



3' 
CT  A  TA                       R           C   C                                     ------     TAAAAAGAGGGGCC
  CA TG  GGAAGAGGATCCTCTCCTGAGCT AGGATGGGGAT CTC TGACCACGAAATCTGGGCCGTTCAAATTTAATCCAAC      GGCTC              
  || ||  ||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||      |||||              A
  GT AC  CCTTCTCCTAGGAGAGGACTCGA TCCTACCCTTA GAG ACTGGTGCTTTAGGCCTGGCAAGTTTAAATTAGGTTG      TTAAT              
AT  A  TC                       G           A   A                                     CCAACA     AATATTGAAAATCT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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