SE3020372

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_509
  • Malus domestica
  • SE3020372
  • Mutator
  • MadM74
  • MDC001542.287:7606-8033
  • AAGGATTAA
  • GAACAATACTTGGCTACTCAAAGATGAGTAGGAACTCCTACTCAAAATTT

Secondary structure and sequence

TSD    TIR
5'



3' 
AAGGATTAA                                                  ATCAAAATTATTC   GTCAACTTATAGAACTTCGCGTTTATAATCAGAACCATTCATATTATAAATCACCCTATAAAGATCGTCGCTACAAAAAATCAATTAAAACTAAGGTCGTTTAGTTATCAAACTGTTTAAAAACAAATGAACGATATTG
         GAACAATACTTGGCTACTCAAAGATGAGTAGGAACTCCTACTCAAAATTT             GTT                                                                                                                                           
         ||||||||||||||||||||||||||||||||||||||||||||||||||             |||                                                                                                                                           G
         CTTGTTATGAACCGATGAGTTTCTATTCATCCTTGAGGATGAGTTTTGAG             AGT                                                                                                                                           
AATTAGGAA                                                  -AATCACAAAATT   GTCTCGAAACACAAATACTAGTCTTGGCAAATATGATACTTAGTGTAACATTTCTAGTGGATACGTTTTTTATTTAATTTTGATTCCAGTAAATCAGTTAGATAACATCGTTTATGCATCTGTCAAGCATTACGAAAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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