SE3020375

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_512
  • Malus domestica
  • SE3020375
  • Mutator
  • MadM10
  • MDC026782.74:165-401
  • CGAAAACTG
  • TGGGAGGCAGATTGTCTGCCCTCCTGTTTGGGTGCCCTTCCCATTCCCTTTTATTTGTTCGGTCACGGTTAAGCCACATCAACATTTTATATT

Secondary structure and sequence

TSD    TIR
5'



3' 
CGAAAAC                        TG          C   C               -  T                  A               CTTATT         TTTATT
       TGGGAGGCAGATTGTCTGCCCTCC  TTTGGGTGCC TTC CATTCCCTTTTATTT GT CGGTCACGGTTAAGCCAC TCAACATTTTATATT      GTTTTTTGT      
       ||||||||||||||||||||||||  |||||||||| ||| ||||||||||||||| || |||||||||||||||||| |||||||||||||||      |||||||||       
       GCCCTCCGTTTAACAGACGGGAGG  AAACCCACGG AAG GTAGGGGAGAATAAA CA GCTAGTGCCAATTCGGTG AGTTGTAAAATATAA      TAAAAAATA      
GTCAAAA                        RM          -   A               A  C                  C               -----T         TCTCTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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