Plant MITE

SE3020376

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_513
Malus domestica
SE3020376
Mutator
MadM55
MDC019042.194:552-768
GTTGGCGAC
GTTGGCGACGGATCAGGATCCTCTCCTGAGCAAATAGAGAGGATCCTCCTAACCGGGCCCATCGGGCCGTTCAAAATTTATCCAACGGTTA

Secondary structure and sequence

TSD TIR

5'

3'

    G                              A            CTA      CC        C       A               -CAAACAGGG    CCAC
GTTG CGACGGATCAGGATCCTCTCCTGAGCAAAT GAGAGGATCCTC   ACCGGG  CATCGGGC GTTCAAA TTTATCCAACGGTTA          AGCT    
|||| |||||||||||||||||||||||||||||| ||||||||||||   ||||||  |||||||| ||||||| |||||||||||||||          ||||     
CAGC GTTGCCTAGTCCTAGGAGAGGACTCGTTTA CTCTCCTAGGAG   TGGCCC  GTAGCTCG CAAGTTT AAATAGGTTGCCAAT          TTGA    
    G                              G            AAC      AT        T       A               CTTAATAATA    AAAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020376

GTTGGCGACGGATCAGGATCCTCTCCTGAGCAAATAGAGAGGATCCTCCTAACCGGGCCCATCGGGCCGTTCAAAATTTATCCAACGGTTACAAACAGGGAGCTCCACTAAAAGTTATAATAATTCTAACCGTTGGATAAAATTTGAACTGCTCGATGTACCCGGTCAAGAGGATCCTCTCGATTTGCTCAGGAGAGGATCCTGATCCGTTGGCGAC

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