SE3020378

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_515
  • Malus domestica
  • SE3020378
  • Mutator
  • MadM9
  • MDC009976.356:1120-1360
  • TATGTTTAT
  • ATGATGATCTTTTCCGGATTCCCTTTGTAAGGATTTTGGAGATTCTCAAATTGTGTCAGTTCATCGTACATCGTGCGG

Secondary structure and sequence

TSD    TIR
5'



3' 
TATGTTTATGA    T            A   C                                   A   C  C             --------C  TAAATCATTTTAAATAATTTTATT
           ATGA GATCTTTTCCGG TTC CTTTGTAAGGATTTTGGAGATTCTCAAATTGTGTC GTT AT GTACATCGTGCGG         TA                        
           |||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||| || |||||||||||||         ||                        T
           TACT CTAGGAGAGGCT AAG GAAACATTCCTAGAATCTCTAGGAGTTTAACACAG CAA TA CATGTAGCACGCC         CA                        
TATTTGTATCG    C            A   A                                   A   A  A             AATTAAAAG  GTCCATGATAAATATAAATTAAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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