SE3020382

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_519
  • Malus domestica
  • SE3020382
  • Mutator
  • MadM15
  • MDC011132.350:4977-5184
  • CATTTCAAG
  • GGGACATGGATCCTCTCCGGATCCAGTTATCCTAATCCACCTAGTCAAATCATTCGGACCTGATCCAACGGCTA

Secondary structure and sequence

TSD    TIR
5'



3' 
CATTTCAA                C           A                              ---------C           C  AAGTT  TAT     TTA
        GGGACATGGATCCTCT CGGATCCAGTT TCCTAATCCACCTAGTCAAATCATTCGGAC          TGATCCAACGG TA     AT   GACTT   
        |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||          ||||||||||| ||     ||   |||||   A
        CCCTGTACCTAGGAGA GCCTAGGTCAA AGGATTAGGTGGATCAGTTTAGTAGGCTTG          ACTAGGTTGTT AT     TG   CTGAG   
GAACTTTA                A           C                              ATGACTTTAA           A  --GTT  TCC     TGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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