SE3020387

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_524
  • Malus domestica
  • SE3020387
  • Mutator
  • MadM28
  • MDC015381.171:2112-2529
  • ATGTTGGTT
  • TGGCTTAAATGTCAAAATGGTCCTTGTGTTATATACTATCGACCAATTAGTCCCTATGTTTTCAATTTGGCCAAATTAGTCCTTCTGTTTACATCTATTAGTTAACTCAAGACAATTTGTTAAAGGACCGTCAAAATTGACATGTGCTAGACACATG

Secondary structure and sequence

TSD    TIR
5'



3'
ATGTTGGT                      C       AT  A    C AC     -       A                          TTC                 T  C                   G  C  C                   -      AGAGGACAAAAAC   ATTT  -   ACACCCACTAAACATATACAATGCCT
        TGGCTTAAATGTCAAAATGGTC TTGTGTT  AT CTAT G  CAATT AGTCCCT TGTTTTCAATTTGGCCAAATTAGTCC   TGTTTACATCTATTAGT AA TCAAGACAATTTGTTAAAG AC GT AAAATTGACATGTGCTAGA CACATG             GCA    TA TGT                          
        |||||||||||||||||||||| |||||||  || |||| |  ||||| ||||||| ||||||||||||||||||||||||||   ||||||||||||||||| || ||||||||||||||||||| || || ||||||||||||||||||| ||||||             |||    || |||                          A
        ACCGAATTTACAGTTTTACCAG AACACAA  TG GATA C  GTTAA TCAGGGA ACAAAAGTTAAACCGGTTTAGTCAGG   ACAAATGTAGGTAATCG TT AGTTCTGTTAGACAATTTC TG TA TTTTAACTGTACATGATTT GTGTAT             GAG    TC TTT                          
    TTGT                      A       GC  A    A CA     A       C                          TAC                 T  A                   -  T  A                   A      ----------CAT   ---T  A   AACTTGTTTCACAGTTAAAGATTTCT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End