SE3020393

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_530
  • Malus domestica
  • SE3020393
  • Mutator
  • MadM11
  • MDC022831.238:10700-10864
  • TGTGTTTAG
  • TAGGGTAGTGCTATTCACACCCCCATTTTTACTTCCCACACATTCCTTGTTAATATTTGTC

Secondary structure and sequence

TSD    TIR
5'



3' 
TGTGTT      A        C    -    A             C    T    G     -A      CT   ATTTTCTTCAA
      TAGGGT GTGCTATT ACAC CCCC TTTTTACTTCCCA ACAT CCTT TTAAT  TTTGTC  TTG           
      |||||| |||||||| |||| |||| ||||||||||||| |||| |||| |||||  ||||||  |||            
      GTCCCA CACGATAG TGTG GGGG AAAAATGGAGGGT TGTG GGAA AGTTA  GGACGG  AGT           
ATTTGT      C        T    T    -             A    -    G     AA      -C   TTGCTTTACTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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