Plant MITE

SE3020397

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_534
Malus domestica
SE3020397
Mutator
MadM9
MDC022428.331:1724-1964
ATTTTAGAG
TTTAGAGGAATGAGGATCATTTTCAAATTCTCTTTGTGAGGATTTTGGTGATTTTTAAATCGTGTTCGTTCATCGTATATT

Secondary structure and sequence

TSD TIR

5'

3'

AT       -G          A     AA                      T     -                C          ---------------    G T  GTTTTTGTCAGGTACTATTCAT
  TTTAGAG  AATGAGGATC TTTTC  ATTCTCTTTGTGAGGATTTTGG GATTT TTAAATCGTGTTCGTT ATCGTATATT               GTAC G CA                      
  |||||||  |||||||||| |||||  |||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||               |||| | ||                       
  AGATTTT  TTACTCCTAG AGAGG  TAGGAGAAACACTCTTAAAACC CTAAG AGTTTAGCACAGGCAA TAGCATGTAG               TAAA A TT                      
 G       AA          G     CC                      -     Y                A          TACYRCATTTTTTAA    - -  TATGAAAATAAATTTTAGTTTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020397

ATTTTAGAGGAATGAGGATCATTTTCAAATTCTCTTTGTGAGGATTTTGGTGATTTTTAAATCGTGTTCGTTCATCGTATATTGTACGGTCAGTTTTTGTCAGGTACTATTCATATTTGATTTTAAATAAAAGTATTTAAAATAATTTTTTACRYCATGATGTACGATAAACGGACACGATTTGAYGAATCCCAAAATTCTCACAAAGAGGATCCGGAGAGGATCCTCATTAATTTTAGAG

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