SE3020398

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_535
  • Malus domestica
  • SE3020398
  • Mutator
  • MadM82
  • MDC005186.388:13661-13919
  • GAAAGTGAC
  • CGGAATTAGATCCTATCCGGATCTCCTCACTGTGGATATGGGGAATCGATTAATATCAACCGTTGATCAAATATCGTGCAGCCATAATT

Secondary structure and sequence

TSD    TIR
5'



3'
GAAAGTGA              A    G            T    -A      A   A      T   C    G      T      CA   A  A  GAATG       --      CAAAA      AGC
        CGGAATTAGATCCT TCCG ATCTCCTCACTG GGAT  TGGGGA TCG TTAATA CAA CGTT ATCAAA ATCGTG  GCC TA TT     CTTTTTA  TATTTT     TAAAAC   
        |||||||||||||| |||| |||||||||||| ||||  |||||| ||| |||||| ||| |||| |||||| ||||||  ||| || ||     |||||||  ||||||     ||||||    
        GCCTTAATCTAGGA AGGT TAGGGGAGTGAT CCTA  GCCCCT AGT AATTAT GTT GCAA TAGTTT TAGTAC  TGG GT AA     GAAAAAT  ATAAAA     GTTTTG   
CAGTGAAA              G    G            T    GG      -   A      T   A    G      T      AC   C  C  -AAAA       TT      AATGC      CTC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End