SE3020399

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_536
  • Malus domestica
  • SE3020399
  • Mutator
  • MadM9
  • MDC013907.249:6340-6579
  • GGATAACAC
  • CGAGTGAGGATCCTCGCCATATCCTCTTTGTGAGGATTCCYGYYATRCTCAAATRACATCCGTTRATTGTACATCGTACGGTTAGAAATCATTGTAATTTTTTTATTTA

Secondary structure and sequence

TSD    TIR
5'



3'
GGATAACA    T      C      A                   C Y YY  R       R         R            AC      ---AAA   TT   ATT   T      AA
        CGAG GAGGAT CTCGCC TATCCTCTTTGTGAGGATT C G  AT CTCAAAT ACATCCGTT ATTGTACATCGT  GGTTAG      TCA  GTA   TTT TATTTA  
        |||| |||||| |||||| ||||||||||||||||||| | |  || ||||||| ||||||||| ||||||||||||  ||||||      |||  |||   ||| ||||||   
        GCTC CTCCTA GAGTGG ATAGGAGAAACACTTCTAA G C  TA GAGTTTA TGTAGGCAA TAACATGTAGCA  TCAGTC      AGT  CAT   AAA ATAAGT  
CACAATAG    T      A      C                   A C TC  G       G         G            CA      AAAAGA   -C   GAC   T      TA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End