SE3020400

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_537
  • Malus domestica
  • SE3020400
  • Mutator
  • MadM26
  • MDC004258.337:3041-3268
  • ATTTTACCT
  • TGGAATTGGATTCGCTTCGGACCTTAGTATCCGGAGCCTAAAGATCAATTCATCTGGGCC

Secondary structure and sequence

TSD    TIR
5'



3' 
ATTTTACC              C             A           A            C      --------------   G   GGTGTGTAAAAGAAATCAAAGCCATTGGTTTT
        TGGAATTGGATTCG TTCGGACCTTAGT TCCGGAGCCTA AGATCAATTCAT TGGGCC              GCT ATT                                
        |||||||||||||| ||||||||||||| ||||||||||| |||||||||||| ||||||              ||| |||                                G
        ACCTTAACCTAGGC AGGCCTGGAATTA AGGCTTCGGAT TCTAGTTAAGTA ACCCGG              ATT GCC                                
TCCATTTT              A             C           C            A      AATGTTTAAGTTAG   -   AAGGGTAATTGAGTAAAAGGACCGGGTGGTGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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