SE3020403

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_540
  • Malus domestica
  • SE3020403
  • Mutator
  • MadM4
  • MDC011012.139:4541-4728
  • TTTCAATTT
  • GAGTAATGCTAGAGAGAATAAATTTAGAGACTAAAATTGCAAACTAAATGATGTGT

Secondary structure and sequence

TSD    TIR
5'



3' 
TTTCAATTT            A    ATA               -A   C                CACCAATA  -----------AA     ACGTCT
         GAGTAATGCTAG GAGA   AATTTAGAGACTAAA  TTG AAACTAAATGATGTGT        GA             TGAGC      
         |||||||||||| ||||   |||||||||||||||  ||| ||||||||||||||||        ||             |||||       
         CTCATTACGATT CTTT   TTAAATCTCTGATTT  AAC TTTGATTTGCTGTACA        CT             ATTCG      
TTTAACTTT            C    GAC               AA   T                TTTAACTA  AACCAAATAATAA     CAACTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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