SE3020416

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_553
  • Malus domestica
  • SE3020416
  • Mutator
  • MadM11
  • MDC010473.389:3067-3230
  • CAGTTAAAG
  • GGGGTGTGATATTCACACACCCCTTTTTACTTCTCCCATACCTTTTTAGTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
CAGTTAAA        A                         CC          --      TCGG    CG    GGATGAA
        GGGGTGTG TATTCACACACCCCTTTTTACTTCT  CATACCTTTT  TAGTTT    CCGT  GATC       
        |||||||| |||||||||||||||||||||||||  ||||||||||  ||||||    ||||  ||||       T
        CCCCACAC ATAGGTGTGTGGGGAAAAATGAAGA  GTGTGGAGAA  ATTAAA    GGCA  CTAG       
AAATTGAC        G                         AT          CA      TACA    -A    AAGAAGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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