SE3020417

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_554
  • Malus domestica
  • SE3020417
  • Mutator
  • MadM57
  • MDC005563.93:776-1035
  • TTAAGTAAT
  • TTAAGTAATGGATTTGGATCCTCGCTAGATCCCCYCCCYGGGGATCCTAAGGATCAACGAACACGGACCGTTGATAAAAAATTGTGCGGCCACAATT

Secondary structure and sequence

TSD    TIR
5'



3' 
    AG   T             C    G      Y   Y          A                         A          C  -  A     TTTA       T        -CAC C      AT
 TTA  TAA GGATTTGGATCCT GCTA ATCCCC CCC GGGGATCCTA GGATCAACGAACACGGACCGTTGAT AAAAATTGTG GG CC CAATT    TCTTTTT ATATTTTT    G AAAACG  
 |||  ||| ||||||||||||| |||| |||||| ||| |||||||||| ||||||||||||||||||||||||| |||||||||| || || |||||    ||||||| ||||||||    | ||||||   
 AAT  ATT CCTAAACCTAGGA CGGT TAGGGG GGG CTCCTAGGAT CCTAGTTGCTTGTGTCTGGCAACTA TTTTTAACAC CC GG GTTAA    AGAAAAA TATAAAAA    C TTTTGT  
G   GA   -             A    A      R   A          C                         A          A  A  -     TTTA       -        TTTT A      TG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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