SE3020419

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_556
  • Malus domestica
  • SE3020419
  • Mutator
  • MadM14
  • MDC008980.250:3154-3668
  • TTTATTATT
  • TATTATTGAGTAAATTGTAGCTATGGTTCCTTAACTTTAATTAAATTGGAGCAATGGTCCCTCAATTAAAAATTCATTACCATTGGTCCCTCAACTCATCAAAACATGCAACTCTGATCC

Secondary structure and sequence

TSD    TIR
5'



3'
TT  T  TT             CT  G   C                                                                           CA  CAA  C  A   CTCAACTAAAAATTCATTACCATT      --- C   -----  TA  - C  C  GAGAAATAGTCCCTCAACTTTAACCCAATTGGAGCAATAGTCCCTCAACTTTAACCCAATTTTAGTAATGGTCATTCCAACATAACTCATTTTGA
  TA TA  GAGTAAATTGTAG  AT GTT CTTAACTTTAATTAAATTGGAGCAATGGTCCCTCAATTAAAAATTCATTACCATTGGTCCCTCAACTCATCAAAA  TG   CT TG TCC                        GGTCCC   T AAC     TT  AT C AA CG                                                                                               
  || ||  |||||||||||||  || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||   || || |||                        ||||||   | |||     ||  || | || ||                                                                                                
  AT AT  CTCATTTAACATC  TA CAG GAATTGAAATTAGTTTAACTTCGTTACCAGGGAGTTAATTTTTAGGTAATGGTAATCAGGGAGTTGAGTAGTTTT  AC   GA AC AGG                        AGCAGT   A CAG     AA  AG G TT TA                                                                                               
TT  T  TT             CT  A   A                                                                           AC  ATC  T  C   ---------------------AAA      CGA G   TCTTA  --  A -  T  CTCAATACAACCTTTCTGGTAACACTGTTAACCCCAGGGAATTGAGTAGTTTTGCCCATCGATTTCCGAAAAAGCAGTTGAAGTAGTCTTAAAAC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End