SE3020421

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_558
  • Malus domestica
  • SE3020421
  • Mutator
  • MadM7
  • MDC008388.517:4702-4923
  • CAACCCAAG
  • GGGGAAGAGATCCCCTCCAGATCTCTCCCACCAAATCTTAGGGATCAGAAGATTCGGGCTCTTGAAATTTGATCCAACGCCTACAAACAGGAG

Secondary structure and sequence

TSD    TIR
5'



3' 
CAACCCAA              CT  -----A         C     A  T        A A                          A   C      -----------ACA    GT
        GGGGAAGAGATCCC  CC      GATCTCTCC ACCAA TC TAGGGATC G AGATTCGGGCTCTTGAAATTTGATCC ACG CTACAA              GGAG  
        ||||||||||||||  ||      ||||||||| ||||| || |||||||| | |||||||||||||||||||||||||| ||| ||||||              ||||   
        CCCCTTCTCTAGGG  GG      TTAGAGAGG TGGTT AG ATCCCTAG C TCTAGGCCTGGGAACTTTAAACTAGG TGT GATGTT              TCTC  
GAACCCAA              AT  GATGAC         T     C  T        A C                          G   T      AATAATATTGAAAA    CC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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