SE3020422

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_559
  • Malus domestica
  • SE3020422
  • Mutator
  • MadM4
  • MDC005984.457:10639-10923
  • CAACTTGCA
  • ACTTGCACTGT

Secondary structure and sequence

TSD    TIR
5'



3' 
 CA     CAC   ATGTTTAATTTA    TAATGTTAGGGACATTGAATTTCTAAGGGTAATGCTAGAGAGACTAAATTTGTAGACAAAATTTGCAAACTAAATGATGTGTCACTAATAAGAATGAGCATGTTTACCAATGCTTAAGT
   ACTTG   TGT            AGAG                                                                                                                       
   |||||   |||            ||||                                                                                                                        
   TGAAT   ACA            GGTA                                                                                                                       
TAA     AAA   ------------    ATAAACATACCCTTGGTATACCATCCTGTTACAGGTAATTAACCCATTACGATCCCTCTGATTTAAATATTCGTTTTAAAACATTTGATTTATTACACTTTTAACTACTAACTTAATAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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