SE3020424

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_561
  • Malus domestica
  • SE3020424
  • Mutator
  • MadM4
  • MDC016343.187:9280-9464
  • TAGAATGTA
  • TGTAGAGTAATGCTAACGA

Secondary structure and sequence

TSD    TIR
5'



3'
TAGAA G          C  --    GACTAC    A  A     -CA             ---------------------T      AACTAATAATTAGCAC
     T TAGAGTAATG TA  ACGA      ATTT TA ATTAA   TTGTAAACTAAAT                      ATGTGT                
     | |||||||||| ||  ||||      |||| || |||||   |||||||||||||                      ||||||                A
     A ATCTCATTAC AT  TGCT      TAAA AT TGATT   AACATTTGATTTA                      AATAAT                
ATGTA G          A  CC    --AATT    C  C     CAA             CTGTACCTTCAACTACTAACCC      GAATTTGCCATTATTT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End