SE3040426

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_563
  • Malus domestica
  • SE3040426
  • CACTA
  • MadC1
  • MDC014010.340:25017-25384
  • TTA
  • ACACTATGTTTGGATGAAGGAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                      ----ATAAA   -- AAA   ---  A   AA -- C -  ATTTACAAATTGACATGCACCAATTCCTTTGTTTGGCTTCATAAACATAGAAAATTAGAATTTCTGCATAGAAAAAAACTTGGAATTTGGCACCTCCAATTCCCAAGTTTAAATTCCATGTAAATAGG
  ACACTATGTTTGGATGAAGGAA         CTT  G   TTT   GG TAA  G  T A GA                                                                                                                                
  ||||||||||||||||||||||         |||  |   |||   || |||  |  | | ||                                                                                                                                T
  TGTGATACAAACCTACTTCTTT         TGA  T   CTT   AT TTT  A  G C AT                                                                                                                                
AT                      AAATTCTAA   TT ---   AAA  -   -- CT - C  TAACTTTATTGCTCTGAAATAAAAGATCTTAAACACTTAAAAGAACAAACCAATTGCATTTTCTTGTTACCTTAACTTATACCTTAAACAATAAAAATTTGAGAGTTAGTATCTTTAACCCTTTACTG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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