SE3020430

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_567
  • Malus domestica
  • SE3020430
  • Mutator
  • MadM84
  • MDC005553.196:2978-3152
  • CAATTCGAC
  • TCGACGAGAAATTTTTCAGTGTGCCAGTAATACGCCCGT

Secondary structure and sequence

TSD    TIR
5'



3' 
CAAT   ---AC                   CA T      CCC  ACCC C        -AAGT    A             C   AC  GAAA
    TCG     GAGAAATTTTTCAGTGTGC  G AATACG   GT    C GGTACACC     TTAT TATATAATTGGTT GAA  TT    
    |||     |||||||||||||||||||  | ||||||   ||    | ||||||||     |||| ||||||||||||| |||  ||    A
    AGC     CTCTTTAAAAAGTCGCATG  C TTGTGC   CA    G CCATGTGG     AGTA ATATGTTAACCAA CTT  AA    
   T   CTAAC                   AA C      ---  ---- A        CTAAC    -             -   AA  AAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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