SE3020432

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_569
  • Malus domestica
  • SE3020432
  • Mutator
  • MadM9
  • MDC010348.257:6812-7051
  • TTATTTAAA
  • AAGAGAGAGGATCCTCGCTGGATCCTCTTTGTGAGGATCCCAGGGATCCTCCAAACACATCCGTTCATTGTACATTGTGCGGCCAGTTTTCGTCAGGTACTGTTTATATT

Secondary structure and sequence

TSD    TIR
5'



3' 
TTATTTA   A               G                     A         C   -                        C  C   TTT    CAG   CTG   A    CAAT
       AAG GAGAGGATCCTCGCT GATCCTCTTTGTGAGGATCCC GGGATCCTC AAA CACATCCGTTCATTGTACATTGTG GG CAG   TCGT   GTA   TTT TATT    
       ||| ||||||||||||||| ||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||| || |||   ||||   |||   ||| ||||     
       TTC CTCTCCTAGGAGCGG CTAGGAGAAACACTCCTAGGG CCCTAGGAG TTT GTGTAGGCAAGTAGTATGTAGCAC CC GTC   AGTA   CAT   AAA ATAA    
AAATTTA   G               Y                     C         -   A                        T  A   TTT    --A   TTA   A    ATTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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