SE3020434

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_571
  • Malus domestica
  • SE3020434
  • Mutator
  • MadM85
  • MDC020470.187:2548-2715
  • TAGATAGAA
  • TTGGCTACAATACTTATATGTATTTAGTACAATCATCATCRCAACGGTCAGGAGGTGATTGTATTAAATACATATATCAGGTGA

Secondary structure and sequence

TSD    TIR
5'



3' 
TAGATAGAAGAAT                     --                   RCA    -----------   GGA    AT     T
             TTGGCTACAATACTTATATGT  ATTTAGTACAATCATCATC   ACGG           TCA   GGTG  TGTAT 
             |||||||||||||||||||||  |||||||||||||||||||   ||||           |||   ||||  ||||| A
             GACTGATGTTATGAATGTACA  TAAATTATGTTAGTAGTAG   TGCC           AGT   CTAT  ACATA 
 AAATAGATACCT                     CT                   -AC    TAAATATATTA   GGA    AT     A
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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