SE3020437

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_574
  • Malus domestica
  • SE3020437
  • Mutator
  • MadM10
  • MDC010648.242:4569-4768
  • GATAATATT
  • TATTGGAGGAGGATTCTATACCTTCCTAATATCTCTACCCTTTC

Secondary structure and sequence

TSD    TIR
5'



3'
GATAA                 A      CC  ATA    TA  C    ATGC     TATT   ACAGTCACGGTTAAACCACATCAACATCTTATATTAAT
     TATTGGAGGAGGATTCT TACCTT  TA   TCTC  CC TTTC    CCTCT    TGA                                      
     ||||||||||||||||| ||||||  ||   ||||  || ||||    |||||    |||                                      T
     ATAGCCTCCTCCTAAGA ATGGGA  AT   AGAG  GG AAAG    GGAGA    GTA                                      
TCATA                 G      AT  --A    TA  T    -GTA     ----   GAGTGTGTAACAAAAAATAGAATAATAGAGATATTTTT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End