Plant MITE

SE3020438

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_575
Malus domestica
SE3020438
Mutator
MadM86
MDC013602.227:612-794
TTTATTTAG
AGGGTAATGCTAGACAGACTAAAATTTTAAAATAAATTTGCAAARCAAATGATYTG

Secondary structure and sequence

TSD TIR

5'

3'

TTTATTT         C   ACA  C            ATA     -     R        Y  -----------------  GTCAATAAGAAATAAAC
       AGGGTAATG TAG   GA TAAAATTTTAAA   AATTT GCAAA CAAATGAT TG                 TC                 
       ||||||||| |||   || ||||||||||||   ||||| ||||| |||||||| ||                 ||                 A
       TCCCATTAC ATC   CT GTTTTAAAATTT   TTAAA CGTTT GTTTATTA AC                 AT                 
ATTTATC         A   CTR  A            GAG     A     G        T  CAACAARTACTAACWTA  AATTCACAACTAATTGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020438

TTTATTTAGGGTAATGCTAGACAGACTAAAATTTTAAAATAAATTTGCAAARCAAATGATYTGTCGTCAATAAGAAATAAACATGTTAATCAACACTTAATAATWCAATCATRAACAACCATATTATTTGGTTTGCAAAATTGAGTTTAAAATTTTGATCRTCCTAACATTACCCTCTATTTA

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