SE3020439

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_576
  • Malus domestica
  • SE3020439
  • Mutator
  • MadM4
  • MDC006596.1025:4575-4763
  • ATTAATTAA
  • TTAATTAAGAGTAATGCTAGGAAMACTAAATTTGTAGACTTATTTTGCAAACTAAATGATGTG

Secondary structure and sequence

TSD    TIR
5'



3' 
A        -             AAM                -T      C               TCACCAATAA  AAT  -GCAC     TCAA
 TTAATTAA GAGTAATGCTAGG   ACTAAATTTGTAGACT  ATTTTG AAACTAAATGATGTG          GA   GA     ATTTA    
 |||||||| |||||||||||||   ||||||||||||||||  |||||| |||||||||||||||          ||   ||     |||||     
 AATTAATT CTCATTACGATCC   TGATTTAAACATCTGA  TAAAAT TTTGATTTACTGTAC          CT   CT     TGAAT    
         A             CTC                TT      A               -CTTCAACTA  AAC  AATAA     TTGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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