SE3020442

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_579
  • Malus domestica
  • SE3020442
  • Mutator
  • MadM11
  • MDC006003.174:1878-2041
  • TTTATCATG
  • GGGGTGTGCTATCCACACACATTTTTTTACTTCTCACACACCCATTATTAATTTATGTCCGTTGATC

Secondary structure and sequence

TSD    TIR
5'



3' 
TTTATCAT        C           A                      A  A       A  T      -   TTCTTCA
        GGGGTGTG TATCCACACAC TTTTTTTACTTCTCACACACCC TT TTAATTT TG CCGTTG ATC       
        |||||||| ||||||||||| |||||||||||||||||||||| || ||||||| || |||||| |||       T
        CCCCACAC ATAGGTGTGTG GGAAAAATGAAGAGTGTGTGGG AA GATTAAA GC GGCAGC TAG       
TACTATTT        T           G                      -  -       A  T      C   TCTACTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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