SE3020443

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_580
  • Malus domestica
  • SE3020443
  • Mutator
  • MadM15
  • MDC019881.149:2873-3089
  • AAAGTTGAA
  • GGAAAGGGATCCTCTCCGGATCCCTTCCTCCTAATCTAC

Secondary structure and sequence

TSD    TIR
5'



3' 
AAAGTTGAA                      CC  C            CAAATC         A                  CA    -   -      TTATAACTTCT
         GGAAAGGGATCCTCTCCGGATC  TT CTCCTAATCTAC      TGGGGATCC GACCATTGAAATTTGATT  ACCG CTA AAGTTA           
         ||||||||||||||||||||||  || ||||||||||||      ||||||||| ||||||||||||||||||  |||| ||| ||||||            
         CCTTTCCCTAGGAGAGGCCTAG  AA GAGGATTAGGTG      GCTTCTAGG TTGGTAATTTTAAATTAG  TGGC GAT TTTATC           
AAGTTGAAA                      TA  A            ATTCAA         C                  -A    T   G      CCCGGGTGAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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