SE3020453

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_590
  • Malus domestica
  • SE3020453
  • Mutator
  • MadM83
  • MDC009718.258:1592-2156
  • TTAAATTAA
  • TAAATTAAGGGTGAAGTGTCGATTTAGTCTCTGAACTATCACCTCAGTGAAAATTAGGTCCCTGAATTATTTTTTCGGTAAAATAAGTCCCTAAATTCATTAGAAATTGCTAATTTCATCC

Secondary structure and sequence

TSD    TIR
5'



3'
T   A           G            C      C        C                                 T     A       A    CAT       -              ATACTA        A        T  AC              A         TTG  --AC     AGAGTGTAATACCATCATTTTCTCGTCTGTAAGTGCCTAACATTTCATATAGGTTGCAAATTTAATGTCTAATTTACCCTCAAAAGTTAACTTACA
 TAA TTAAGGGTGAA TGTCGATTTAGT TCTGAA TATCACCT AGTGAAAATTAGGTCCCTGAATTATTTTTTCGG AAAAT AGTCCCT AATT   TAGAAAT TGCTAATTTCATCC      TTATATTC AAGCTATT TA  CAATTTTTTGTCAA TTAAGTCAC   AC    ACTTT                                                                                                
 ||| ||||||||||| |||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||| ||||   ||||||| ||||||||||||||      |||||||| |||||||| ||  |||||||||||||| |||||||||   ||    |||||                                                                                                 
 ATT AATTCCCATTT ACGGTTAAATCA GGACTT ATAGTGGA TCACTTTTAATCCAGGGATTTGATAAAAAAGTC TTTTA TCAGGGA TTAA   ATTTTTA ACGGTTAAGGTAGG      AATATAAG TTCGATGA AT  GTTAAAAAGTAGTT AATTCAGTG   TG    TACAC                                                                                                
A   A           G            A      A        A                                 T     A       C    --T       G              GATTAC        C        T  AA              A         CAA  AACG     TATGTGTAACCTCCCATCTAACCATCAAAAAGTATTTCTTTATCACATACCCCAATTGAAACCTCCTCTTCAACCATCAAAAAGTATTTCTTTATC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End