SE3020455

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_592
  • Malus domestica
  • SE3020455
  • Mutator
  • MadM89
  • MDC005515.248:152-380
  • GTGTGGAAA
  • GGAAAGAGATCCTCTCTGGATCTCTCCTTCTAAAGCTCAGAGATCAAGTGATTCG

Secondary structure and sequence

TSD    TIR
5'



3' 
GTGTGGAAA           C   CT                       A              GATA              C      A      TATTATAGCTTTTWATTT
         GGAAAGAGATC TCT  GGATCTCTCCTTCTAAAGCTCAG GATCAAGTGATTCG    TTTGAAATTTGATC AACAGC AAAAAT                  
         ||||||||||| |||  ||||||||||||||||||||||| ||||||||||||||    |||||||||||||| |||||| ||||||                  T
         CCTTTCTCTAG AGA  TCTAGAGAGGGAGGTTTCGGGTT CTAGTTCATTAGGC    AAATTTTAAACTAG TTGTCG TTTTTG                  
AAAGGTGTG           T   AY                       C              ACGA              A      A      TCTATTTAATCATTTTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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