SE3020457

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_594
  • Malus domestica
  • SE3020457
  • Mutator
  • MadM90
  • MDC000500.177:13709-13924
  • TTTAATTTG
  • GGGAACTGGATCCTCTCCGAGGCAAACCCTCGGTATCTTTCTGATCTATTAACACAAGTCGTTGAATTTTAATCAAATGATTACAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TTTAATTT     C                C     C    T  C                 CA         A    A   A    A      TTATTAT      A
        GGGAA TGGATCCTCTCCGAGG AAACC TCGG AT TTTCTGATCTATTAACA  AGTCGTTGA TTTT ATC AATG TTACAA       GATTTT 
        ||||| |||||||||||||||| ||||| |||| || |||||||||||||||||  ||||||||| |||| ||| |||| ||||||       |||||| G
        TCCTT ACCTAGGAGAGGCTCT TTTGG AGCC TA AAAGACTGGATGATTGT  TTGGCAACT AAAA TAG TTGC AATGTT       TTAGAG 
GTTTAATT     A                A     A    C  A                 AC         -    C   G    C      CGTCTTT      A
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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