SE3020460

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_597
  • Malus domestica
  • SE3020460
  • Mutator
  • MadM11
  • MDC019939.465:2113-2273
  • TTCTTTAGG
  • AGGGGTGTGCTATCCACACACCCCTTTTTACTTCTCCCACACC

Secondary structure and sequence

TSD    TIR
5'



3' 
TTCTTT         C                          C      CTTG       - T   A  T    TTCTTCA
      AGGGGTGTG TATCCACACACCCCTTTTTACTTCTC CACACC    TTAATTT C GTC TT GATC       
      ||||||||| |||||||||||||||||||||||||| ||||||    ||||||| | ||| || ||||       A
      TCCCTACAC ATAGGTGTGTGGGGAAAAATGAAGAG GTGTGG    AATTAAA G CGG AG CTAG       
TTTCTT         T                          A      -AAA       A C   C  C    CCTACTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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