Plant MITE

SE3020462

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_599
Malus domestica
SE3020462
Mutator
MadM11
MDC012885.353:1292-1457
TTAGTAGAA
AAGGGGTGTGCTATCCACACACCCCTTTTTACTTCTCACACACCCTTTGTTAATTTATGTTCCGTTGATC

Secondary structure and sequence

TSD TIR

5'

3'

TTAGTAG          C            CC                       GT      A  TT      -   TTCTTCA
       AAGGGGTGTG TATCCACACACC  TTTTTACTTCTCACACACCCTTT  TAATTT TG  CCGTTG ATC       
       |||||||||| ||||||||||||  |||||||||||||||||||||||  |||||| ||  |||||| |||       A
       TTCCCCACAC ATAGGTGTGTGG  AAAAATGAAGAGTGTGTGGGAAA  ATTAAA AC  GGCAGC TAG       
AAGATGA          T            -T                       --      A  -C      C   CCTACTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020462

TTAGTAGAAGGGGTGTGCTATCCACACACCCCTTTTTACTTCTCACACACCCTTTGTTAATTTATGTTCCGTTGATCTTCTTCAATTCATCCGATCCGACGGCCAAAAATTAAAAGGGTGTGTGAGAAGTAAAAATGGTGTGTGGATATCACACCCCTTAGTAGAA

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