SE3020468

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_605
  • Malus domestica
  • SE3020468
  • Mutator
  • MadM94
  • MDC017940.282:1531-1781
  • CTCTTTCAA
  • GGAATTGGATCATCGCCGGATCTAATTGCTGGGGATCCTAGGGATCAACTCACGTAGGCCGTTGATCAAAAATCATACGGTCACAATTAAATGTTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
CTCTTTCAA           A               GC        C  G           C  A          C       ATA      C    -----------AAA      AAAA       AGT
         GGAATTGGATC TCGCCGGATCTAATT  TGGGGATC TA GGATCAACTCA GT GGCCGTTGAT AAAAATC   CGGTCA AATT              TGTTTT    GTAAAAC   
         ||||||||||| |||||||||||||||  |||||||| || ||||||||||| || |||||||||| |||||||   |||||| ||||              ||||||    |||||||   C
         CCTTAACCTAG AGCGGCCTAGATTAA  ACCCTTAG AT CCTAGTTGAGT TA CTGGCAACTA TTTTTAG   GCTAGT TTAA              ATAAAA    CATTTTG   
AACTTTCTC           G               GT        C  A           A  C          T       CAC      A    AAAAAGAAAAAATA      -GTG       CTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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