SE3020469

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_606
  • Malus domestica
  • SE3020469
  • Mutator
  • MadM41
  • MDC008018.332:2116-2332
  • CTTCTTCTA
  • GGAAATGGATTCTCTCCTGAGCATATGCTCAGGATCCTGCTGAGCAGGACACGAGGACCGTTAGAT

Secondary structure and sequence

TSD    TIR
5'



3' 
CTTCTTCTA                                                              A   TTTCATC            TTATTATAACTTTAA    AC
         GGAAATGGATTCTCTCCTGAGCATATGCTCAGGATCCTGCTGAGCAGGACACGAGGACCGTT GAT       CAACGGCTACAA               AAGG  
         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||       ||||||||||||               ||||   
         CCTTTACCTAAGAGAGGACTCGTATACGAGTCCTAGGACGACTCGTCTTGTGCTCCTGGCAA CTA       GTTGCCGATGTT               TTCC  
ATCTTCTTC                                                              C   CTTTTAA            -------------TG    TC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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