SE3020474

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_611
  • Malus domestica
  • SE3020474
  • Mutator
  • MadM20
  • MDC023504.54:49679-49895
  • CAAAACGGG
  • GGGATTTGGATCCTTTCCTGAGCAGGGGGTCCGAATCCTCCTGACTAGATAACATGGACCGTTGGATTTTGATTCAACGGTTACAA

Secondary structure and sequence

TSD    TIR
5'



3' 
CAAAACGG                 C            C                       T   -                            -TTATTATAA   TT
        GGGATTTGGATCCTTTC TGAGCAGGGGGT CGAATCCTCCTGACTAGATAACA GGA CCGTTGGATTTTGATTCAACGGTTACAA          CTT  
        ||||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||          |||   
        CCCTAAACCTAGGAGAG ACTCGTCTCCCA GCTTAGGAGGACTGGTTTATTGT TCT GGCAACCTAAAACTAAGTTGTCGATGTT          GGA  
GGGCAAAA                 T            A                       -   C                            TGTCTCACAG   AA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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