SE3020478

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_615
  • Malus domestica
  • SE3020478
  • Mutator
  • MadM7
  • MDC033068.9:9466-9680
  • TTCTATTAC
  • GAACTGGATCCCCTCCTGACCCAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TTCTATTACA                T       TAAA      C  A              R  G    TA               A      A  --GG   CCTC
          GAACTGGATCCCCTCC GACCCAA    ACTGAG CT CTGAGCAAGGGATT GG TCGT  AAATTTGATTCAACG CTACAA TA    GAC    
          |||||||||||||||| |||||||    |||||| || |||||||||||||| || ||||  ||||||||||||||| |||||| ||    |||    T
          CTTGGCCTAGGGGAGG CTGGGTT    TGATTC GA GACTCGTTTCCTAA CC AGCA  TTTAAACTAGGTTGC GATGTT AT    TTG    
CATTATCTTC                C       TATA      A  C              A  A    CC               C      A  AATA   AAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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