SE3020479

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_616
  • Malus domestica
  • SE3020479
  • Mutator
  • MadM22
  • MDC008434.489:7918-8133
  • CAAAACTAT
  • GGATCCAGATCCTCTCCGGATCTAAGGATCTGAGCCTAGGGATTAATTGATC

Secondary structure and sequence

TSD    TIR
5'



3' 
CAAAACTAT               CC             -                      YGATYK          G   C    AC     TTATTATA     TT
         GGATCCAGATCCTCT  GGATCTAAGGATC TGAGCCTAGGGATTAATTGATC      GTTGAAATTT ATC AACG  TACAA        ATTTT  
         |||||||||||||||  ||||||||||||| ||||||||||||||||||||||      |||||||||| ||| ||||  |||||        |||||   
         CCTAGGTCTAGGAGA  CCTAGATTCTTAG ACTCGGATCCCTAGTTAACTAG      CAACTTTAAA TAG TTGC  ATGTT        TAAGG  
TATCAAAAC               AC             G                      GCCGGG          A   C    CA     -TGTCTTC     TG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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