SE3020487

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_624
  • Malus domestica
  • SE3020487
  • Mutator
  • MadM31
  • MDC006606.119:23613-23849
  • ATAATTATT
  • ATAATTATTGAATGAGGATCCTCGGATCCTCTCTGTGAGGATTCTGGGATCTTCAAATTGTGTCCGTTCATCGTACATCATGCGGTCA

Secondary structure and sequence

TSD    TIR
5'



3' 
         T AAT          ---       CTC                -                          C      C     AAA  TATTTTAAAAACGTTTATTTTAAA
 ATAATTAT G   GAGGATCCTC   GGATCCT   TGTGAGGATTCTGGGA TCTTCAAATTGTGTCCGTTCATCGTA ATCATG GGTCA   AT                        
 |||||||| |   ||||||||||   |||||||   |||||||||||||||| |||||||||||||||||||||||||| |||||| |||||   ||                        T
 TATTAATA C   CTCCTAGGAG   CTTAGGA   ATGCTCCTAGGATCCT AGGAGTTTAGTACAGGTAAGTAGCAT TAGTAT CTAGT   GA                        
T        - GTC          AGG       AAA                T                          A      A     --C  AAGCAGTCCATGATAAGTATAAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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