Plant MITE

SE3020490

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_627
Malus domestica
SE3020490
Mutator
MadM97
MDC003098.245:12513-12730
GGAGAAATT
TGAACCCAGATCCTCTKTGGATCTAAAAAAACTGAGCCTAAGGATCAAATAATTCGGACCGTTGAAATTTGATC

Secondary structure and sequence

TSD TIR

5'

3'

GGAGAAAT                K              -      C            A        C              ------CAAR  CT  AAATAGYGGTTCCC
        TGAACCCAGATCCTCT TGGATCTAAAAAAA CTGAGC TAAGGATCAAAT ATTCGGAC GTTGAAATTTGATC          GG  AC              
        |||||||||||||||| |||||||||||||| |||||| |||||||||||| |||||||| ||||||||||||||          ||  ||              T
        GCTTGGGTCTAGGAGA GTCTAGATTTTTTT GATTCG ATTCCTAGTTTA TAGGCCTG CAATTTTAAACTAG          TT  AA              
TTAAAGAG                G              T      A            C        T              ATTGCRGTTA  --  TAATATTGAAAATC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020490

GGAGAAATTGAACCCAGATCCTCTKTGGATCTAAAAAAACTGAGCCTAAGGATCAAATAATTCGGACCGTTGAAATTTGATCCAARGGCTACAAATAGYGGTTCCCTCTAAAAGTTATAATAATTATTGRCGTTAGATCAAATTTTAACTGTCCGGATCATTTGATCCTTAAGCTTAGTTTTTTTTAGATCTGGAGAGGATCTGGGTTCGGAGAAATT

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