Plant MITE

SE3020491

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_628
Malus domestica
SE3020491
Mutator
MadM24
MDC016733.277:7170-7410
AGATGTATT
TGAATGAGGATCCTCTCCAGATCCTCTTTGTGAGAATCTTAGGGATCCTCAAATCGTGTCCATTCATCGTACATCATGCAGTTAG

Secondary structure and sequence

TSD TIR

5'

3'

AGATGTAT                       C          A     AG      T     C      A         C   A   A     --AAATT   TTAAATACTTTTATTTAA
        TGAATGAGGATCCTCTCCAGATC TCTTTGTGAG ATCTT  GGATCC CAAAT GTGTCC TTCATCGTA ATC TGC GTTAG       ATT                  
        ||||||||||||||||||||||| |||||||||| |||||  |||||| ||||| |||||| ||||||||| ||| ||| |||||       |||                  A
        ACTTACTCCTAGGAGAGGTCTAG AGAAACACTC TAGAG  CCTAGG GTTTA CACAGG AAGTAGCAT TAG ACG CAGTC       GTC                  
TTATTTAG                       R          C     CY      R     A      Y         R   C   C     AAAAGCA   CATGACAAGTACAAATTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020491

AGATGTATTGAATGAGGATCCTCTCCAGATCCTCTTTGTGAGAATCTTAGGGATCCTCAAATCGTGTCCATTCATCGTACATCATGCAGTTAGAAATTATTTTAAATACTTTTATTTAAAATTAAACATGAACAGTACCTGACGAAAACTGACCGCACGATRTACGATGAAYGGACACAATTTGRGGATCCYCGAGATCCTCACAAAGARGATCTGGAGAGGATCCTCATTCAGATTTATT

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