SE3020492

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_629
  • Malus domestica
  • SE3020492
  • Mutator
  • MadM5
  • MDC019956.158:11035-11223
  • CTTAGCAAA
  • CTTAGCAAAGAGAGATTTTTCAGTGTGACCGGTATACGGGATGGTACACCATGTGTTGTTATA

Secondary structure and sequence

TSD    TIR
5'



3' 
   AG   A           C   -     C  T       A                GTT   CAAA        T  GTGTGATAAA     A
CTT  CAA GAGAGATTTTT AGT GTGAC GG ATACGGG TGGTACACCATGTGTT   ATA    TGGTGAGA AT          AAGTT 
|||  ||| ||||||||||| ||| ||||| || ||||||| ||||||||||||||||   |||    |||||||| ||          ||||| A
GAA  GTT CTCTTTAAAAA TCA CACTG TC TATGTTC ACTATGTGGTGCACAA   TAT    ACCACTCT TA          TTCAA 
   CG   C           A   A     T  T       -                AAT   TCTC        T  AAATAAAAAA     T
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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