SE3020493

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_630
  • Malus domestica
  • SE3020493
  • Mutator
  • MadM41
  • MDC009192.440:3767-3982
  • GATATAATC
  • ATCGGATTTGGATCCTCTCCCGAGSTTATTGAGAGGATCCTCCTCATCAAAACACGTAGACCGTTAGATGAAAATCTAACGGCTA

Secondary structure and sequence

TSD    TIR
5'



3' 
GATATA                    C   S    T              C     A      A A     A                   CAAA     ATCTTCTTT
      ATCGGATTTGGATCCTCTCC GAG TTAT GAGAGGATCCTCCT ATCAA ACACGT G CCGTT GATGAAAATCTAACGGCTA    TAGAG         
      |||||||||||||||||||| ||| |||| |||||||||||||| ||||| |||||| | ||||| |||||||||||||||||||    |||||         A
      TAGCCTAAACCTAGGAGAGG CTC AATA CTCTCCTAGGAGGA TAGTT TGTGCA C GGCAA CTACTTTTAGGTTGCCGAT    TTAAT         
CTAATA                    A   G    C              C     C      C C     C                   ---A     AATATTAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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