Plant MITE

SE3020494

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_631
Malus domestica
SE3020494
Mutator
MadM31
MDC020717.27:3287-3526
TGACCATAT
GAATGAGGATTCTTTTCGGATTTCTTTGTAAGGATTATGAGGATCCTTAAATCGTGTTCGTTTATTATATATCGTGCGGT

Secondary structure and sequence

TSD TIR

5'

3'

TGACCATAT           C          -       A         A    C            TC       A             CAATTTTTTTCA  TACCATTCATATTTAATT
         GAATGAGGATT TTTTCGGATT TCTTTGT AGGATTATG GGAT CTTAAATCGTGT  GTTTATT TATATCGTGCGGT            GG                  
         ||||||||||| |||||||||| ||||||| ||||||||| |||| ||||||||||||  ||||||| |||||||||||||            ||                  T
         CTTACTCCTAG AGAGGTCTAG AGAAACA TCCTAGTAC CCTA GAGTTTAGTACG  CAAGTAG ATGTAGTACGCCA            TA                  
TATACCAGT           C          G       C         A    A            TA       C             ----ATATTTAG  AAATTTATAAAAATAAAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020494

TGACCATATGAATGAGGATTCTTTTCGGATTTCTTTGTAAGGATTATGAGGATCCTTAAATCGTGTTCGTTTATTATATATCGTGCGGTCAATTTTTTTCAGGTACCATTCATATTTAATTTTAAATAAAAATATTTAAAATGATTTATAACCGCATGATGTACGATGAACATGCATGATTTGAGAATCCACATGATCCTCACAAAGAGGATCTGGAGACGATCCTCATTCTGACCATAT

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