SE3020495

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_632
  • Malus domestica
  • SE3020495
  • Mutator
  • MadM98
  • MDC018373.377:10663-10848
  • GTTTGCGTG
  • TTGCGTGGGTAATGGTAGGAAGACAAAATTTGTAGATAAAATTTTATAAACTAAATGA

Secondary structure and sequence

TSD    TIR
5'



3' 
GT     --         G    A    A                   T             ----------------CATGAA    GATGGTTGAATTATT
  TTGCG  TGGGTAATG TAGG AGAC AAATTTGTAGATAAAATTT ATAAACTAAATGA                      AAGT               
  |||||  ||||||||| |||| |||| ||||||||||||||||||| |||||||||||||                      ||||               A
  AGCGT  GCCCATTAC ATCC TTTG TTTAAACATTTGTTTTAAA TGTTTGATTTATT                      TTCA               
       TT         G    C    A                   -             ACAAAATATTTATTCTTACTCG    AATAGTTGTGAATTC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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