SE3020496

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_633
  • Malus domestica
  • SE3020496
  • Mutator
  • MadM8
  • MDC029415.37:1544-1730
  • TCTCAAAGG
  • AGGGGTAATGTTAGGGAGACCACATTTTTTAACCAAATTTTGTAAACCAAATGATGTGGATATTAATGATTAGACTATTACTTAAGTGTTGATTAATATGTTTATTTTCTATTGGTGACACATTATTTGGTTTGCAAATTTGGTTTAAAAATTTAGTCTCCTAGCATTATCCCT

Secondary structure and sequence

TSD    TIR
5'



3' 
 TCTCAA               G    CAC      T          T                 GA       -  --T     -     C    G
       AGGGGTAATGTTAGG AGAC   ATTTTT AACCAAATTT GTAAACCAAATGATGTG  TATTAAT GA   TAGAC TATTA TTAA 
       ||||||||||||||| ||||   |||||| |||||||||| |||||||||||||||||  ||||||| ||   ||||| ||||| |||| T
       TCCCTATTACGATCC TCTG   TAAAAA TTGGTTTAAA CGTTTGGTTTATTACAC  GTGGTTA CT   ATTTG ATAAT AGTT 
GAAACTC               -    ATT      T          -                 -A       T  TTT     T     T    G
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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