SE3020497

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_634
  • Malus domestica
  • SE3020497
  • Mutator
  • MadM53
  • MDC012825.229:12605-12821
  • ATGATTTTC
  • GGATCAGGATCCTCTCCTGAGCAGATGGAGAGGATCCTCCTGACTAGGTCCATCGGGCCGTTCA

Secondary structure and sequence

TSD    TIR
5'



3' 
ATGATTTTC                                           C                    ACTTWTA           CAAAC     GTCCCTCTA
         GGATCAGGATCCTCTCCTGAGCAGATGGAGAGGATCCTCCTGA TAGGTCCATCGGGCCGTTCA       TCCAACGGCTA     AGAGG         
         ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||       |||||||||||     |||||         A
         CCTAGTCCTAGGAGAGGATTTGTCTACTTTTCCTAGGAGGACT GTCCGGGTAGCCCGGCAAGT       AGGTTGCTGAT     TTAAT         
CTTTTAGTA                                           A                    WAAAAAW           ----A     AATATTAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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