Plant MITE

SE3020499

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_636
Malus domestica
SE3020499
Mutator
MadM99
MDC008777.323:7464-7630
CCTTCAATG
AGAGATTTTTTACTCTGCTGGGAACACGAACGGTACACCAAGTATCATAAGACAAATAGTTGGA

Secondary structure and sequence

TSD TIR

5'

3'

CCTTCAATGA              C              -A     C  C    ATC         A        TACTTGAAA
          AGAGATTTTTTACT TGCTGGGAACACGA  CGGTA AC AAGT   ATAAGACAA TAGTTGGA         
          |||||||||||||| ||||||||||||||  ||||| || ||||   ||||||||| ||||||||          
          TCTTTAAAAAATGA ACGGCCCTTGTGCT  GCCAT TG TTCA   TATTCTGTT ATCAACTT         
GTAACTTCCC              C              AG     A  T    CAA         C        TTAAAAAGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020499

CCTTCAATGAAGAGATTTTTTACTCTGCTGGGAACACGAACGGTACACCAAGTATCATAAGACAAATAGTTGGATACTTGAAAAGAAAAATTTTCAACTACTTGTCTTATAACACTTTGTATACCGGATCGTGTTCCCGGCACAGTAAAAAATTTCTCCCTTCAATG

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