SE3020501

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_638
  • Malus domestica
  • SE3020501
  • Mutator
  • MadM4
  • MDC019434.186:13151-13338
  • ATTGAAGAG
  • GGGTAATGCTAGGGGGACCAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
ATTGAAGAG                      GTTT                 R      A    ---------------------TCA  AATAGGAAATAAGC
         GGGTAATGCTAGGGGGACCAAA    TAAACCAAATTTGCAAA TAAATG TGTG                        CC              
         ||||||||||||||||||||||    ||||||||||||||||| |||||| ||||                        ||              A
         CCCATTACGATTCCTCTGGTTT    GTTTGGTTTAAATGTTT GTTTAC ACAC                        AT              
GAGAAGTTA                      AAAC                 G      A    CAACAACTACTAACCTAATAATGA  TCGCAACTAATTGR
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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